Method and system for editing and maintaining a graph schema

ABSTRACT

A system and method for creating and editing graph schema data structures in a collaborative, real time graphical editing environment is disclosed. The system and method further operates to integrate external sources of data as components of the graph schema. The system and method outputs definition files for the graph schema data structure and mapping files.that enable the population of a graph database.

CROSS-REFERENCE TO RELATED APPLICATIONS

This is a utility patent application which claims the benefit of U.S. Provisional Patent Application No. 62/681,912 filed on Jun. 7, 2018 which is hereby incorporated by reference in its entirety for all that it teaches. This specification incorporates by reference the appendices attached to the specification and filed herewith.

GOVERNMENT LICENSE RIGHTS

This invention was made with government support under Grant Nos. DBI-0851052 and 1018554 awarded by the National Science Foundation. The government has certain rights in the invention.

FIELD AND BACKGROUND OF INVENTION

Business users are not able to directly access business data using their own business terminology. When business users need data to generate Business Intelligence (BI) reports, they depend on IT. The IT dept will setup a data warehouse to host the different data sources that the business users need. IT will analyze the different databases and generate an enterprise database schema that will be able to store data coming from the different sources. This schema is generated using data modelling tools (Tool 1). Furthermore, the terminology used in the enterprise schema usually comes from IT and does not consider the terminology that business users use. For example table and attribute names are not agreed business terminology. Subsequently, business users use different tools to manage business terminology, taxonomies, etc. (Tool 2). The business user terminology created in Tool 2 is disconnected from the models that are created with Tool 1. Finally, once an enterprise database schema is created, IT uses data integration ETL tools to move data from source databases to the newly created target data warehouse (Tool 3). It is common that business users identify issues with the data and also want to include new data. Therefore the enterprise database schema is changed and disconnected from the model that was created in Tool 2 and does not use the business terminology created in Tool 1.

The invention is a system for business users and IT professionals alike to directly access data using their own terminologies in a collaborative way by: Enabling business users to model the business knowledge (model); Enabling both business users and IT professionals to make incremental changes to the model. Mapping the business model to the physical databases (govern); and Accessing the data without the need of creating a data warehouse (integrate).

BRIEF DESCRIPTION OF THE DRAWINGS

The headings provided herein are for convenience only and do not necessarily affect the scope or meaning of the claimed invention. In the drawings, the same reference numbers and any acronyms identify elements or acts with the same or similar structure or functionality for ease of understanding and convenience. To easily identify the discussion of any particular element or act, the most significant digit or digits in a reference number refer to the Figure number in which that element is first introduced.

FIG. 1: shows an exemplary flow chart for creating and editing graph schema data structure.

FIG. 2: demonstrates how to visually create the graph schema

FIG. 3: continues to demonstrate how to visually create the graph schema

FIG. 4: continues to demonstrate how to visually create the graph schema

FIG. 5: continues to demonstrate how to visually create the graph schema

FIG. 6: continues to demonstrate how to visually create the graph schema

FIG. 7: continues to demonstrate how to visually create the graph schema

FIG. 8: continues to demonstrate how to visually create the graph schema

FIG. 9: shows the exemplary datatype and cardinality on the left side

FIG. 10: demonstrates the search functionality

FIG. 11: demonstrates multiselecting, and changes to multiple concepts (move, delete, change color) that are propagated in real time to the remote computers also displaying the graph schema.

FIG. 12: demonstrates sharing functionality with permission specifications.

FIG. 13: depicts inputting comments into a chat channel to be stored in the graph schema data structure to be associated with elements of the graph schema, and shared in real time to other computer displaying the graph schema.

FIG. 14: depicts versions of the graph schema in sequence that can be selected and displayed.

FIG. 15: depicts the user interface for selecting a database as a source of content for the graph schema.

FIG. 16: depicts the user interface for displaying metadata about the selected database.

FIG. 17: depicts the user interface for selecting specific content for a mapping.

FIG. 18: depicts the user interface establishing a mapping that is a view.

FIG. 19: depicts the user interface for editing the database query that will be mapped too the view.

FIG. 20: depicts the user interface for integrating the view into the graph schema as concept.

FIG. 21: depicts the user interface for assigning attributes derived from the mapping.

FIG. 22: depicts the user interface for managing multiple mappings used by a graph schema, each mapping represented by a data file containing parameters that define the mapping.

FIG. 23: depicts a flow chart showing how edits to the graph schema input on one remote computer propagate through the server to the other remote computers displaying the graph schema.

FIG. 24: depicts a flow chart showing the process of using the output of the graph schema editor to facilitate graph queries using the schema.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS:

Various examples of the invention will now be described. The following description provides specific details for a thorough understanding and enabling description of these examples. One skilled in the relevant art will understand, however, that the invention may be practiced without many of these details. Likewise, one skilled in the relevant art will also understand that the invention can include many other features not described in detail herein. Additionally, some well-known structures or functions may not be shown or described in detail below, so as to avoid unnecessarily obscuring the relevant description. The terminology used below is to be interpreted in its broadest reasonable manner, even though it is being used in conjunction with a detailed description of certain specific examples of the invention. Indeed, certain terms may even be emphasized below; however, any terminology intended to be interpreted in any restricted manner will be overtly and specifically defined as such in this Detailed Description section.

The invention provides a graph schema editor function that is collaborative. This system lets users work with graphic primitives like circles, lines, label them, which may be a knowledge graph, or ontology. As shown in FIG. 2, an initial primitive can be used to initiate the graph schema instance. The graphic element is shown in FIG. 3 to be a “concept”, and a label and description can be associated with it. The example can be extended where an additional concept is added, and a relationship specified between them (FIG. 4). FIG. 5 shows that the relationship can be assigned a label. FIGS. 6, 7, and 8 show how these elements can be extended to build out the graph schema. The graphical elements are displaying underlying elements of the graph schema, and the relationships between those elements. These data items are stored in the graph schema data structure in a manner where the organization and relationships are preserved in the data structure. The system permits the user to select elements of the graph schema and as a result of the selection, the system uses the graph schema data structure to determine the datatype and cardinality of the selections, which are then displayed to the users operating the remote computers. (FIG. 9). In addition, the system permits the user to input text strings in order to search the schema for the location of those strings. When matching elements in the graph schema are located, the system re-displays the schema to the location where the search results are located. See FIG. 10. The system also permits that multiple items be selected in order to efficiently change or specify attributes or other parameters to the group of selected elements in the graph schema. See FIG. 11.

In some instances, it may be used with a property graph. The server (2304) hosts the instance of the graph schema and lets multiple browsers (2307) access to display and act as a GUI to receive edits from users, (2301) transmit the edits to the server,(2303) where they are incorporated into the graph schema data structure. (2304). For example, a graph schema instance can be initiated and stored as a data structure on the server (101). The schema data structure and its element primitives can be transmitted out (2305) to remote computers that are collaboratively editing the schema. (102). The remote computers then redisplay the graph schema diagram incorporating the new edit. (2306). The server can receive editing commands from the remote computers (103). This cycle continues until the decision is that the editing is completed (103). At that point, a data description file for that graph schema can be generated as output (105). That output file or object can be used by a data querying system to recover data using the graph schema as a location tool. When the server receives an edit, for example, to insert a circle/label/line, (104) it shows up on the screen of each remote computer that is connected to the server (102). This is accomplished by updating the graph schema data structure that is stored on the server and distributing out to the remote computers over a data network the updated graphic information and data structure information that when rendered, displays the revised graph schema. The graphic information may be scripts transmitted to browsers operating on the remote computers. Alternatively, each remote computer may maintain a local copy of the graph schema data structure, and the revisions distributed to the remote computers. In that alternative embodiment, the local data structure is revised and a local module generates the graphic information from the local copy of the graph schema.

In one embodiment, each element of the graph schema that is being edited can be considered a channel where in real time, data that is being input or modified for that element at the server, is transmitted out to the other remote computers in real time in order that the immediate status be displayed. In this manner, multiple users can concurrently edit the same graph schema document at the same time. They can see exactly what other users are doing in real-time (moving elements, creating elements, deleting elements, even multiple elements at a time.). In one embodiment, real time display of the changes is implemented by using an operational transform database to house the graph schema data structure. In another embodiment, real time collaborative editing can be accomplished by diff-match-patch techniques.

Further, it is possible to establish a chat channel that works with the editing, where the chat channel is associated with the element being edited. In one embodiment, each edge and node in the graph schema data structure can have a separate communication thread that corresponds to it. As shown in FIG. 13, an element of the graph schema can be selected and a chat channel opened into which the user can type a message. This is transmitted out to the other users' remote computers through the server. In one embodiment, the chat channel opens on users who are also viewing the selected element. In another embodiment, the chat channel opens to all users who are viewing the schema. In yet another embodiment, the text of the chat channel is stored on the server, and the graph schema data structure is modified so that the selected element entry in the data structure refers to the chat text data for future reference. The system can save the graph schema data structure as a file or other object. This can be done periodically in order that the evolution of the schema can be tracked, and earlier revisions recovered if necessary. To facilitate this, the system can display on the remote computers a list of versions that can be used as a menu for the user to select from to display the graph schema defined by that version. Each file or data object embodying a version can automatically contain a time-date stamp data as metadata that can be used to track the evolution of the schema.

A graph schema for purposes of this disclosure is a data structure stored in computer memory or on a mass storage device, that represents a directed-labeled graph that includes any of the following: a description of the contents of a graph database, the structure of the contents of a graph database, or database constraints. A database constraint is a logical definition that may prevent certain data from being stored in a database. See “Survey of graph database models”, Renzo Angles and Claudio Gutierrez. ACM Comput. Surv. 40, 1, Article 1 (February 2008)., which is hereby incorporated by reference. In a preferred embodiment, the representation of a graph database's schema is defined in a manner such that the graph schema is sufficiently consistent with the representation of the graph database data. Thus, the graph schema may be stored as data in the graph database and rendered, as either string or in graphical form such that graph schema and graph database data appear very similar to a user.

Graph databases may exist in several forms. They share the characteristic that the stored data comprises a collection of directed labeled graph edges. A collection of such edges forms a graph. The realization of a graph database concerns two primary implementations: the edge-labelled graphs, and property graphs. In edge-labelled graphs the node labels and edge labels comprise a single data value. In property graphs the node labels and edge labels may further comprise a set of key-value pairs. See “Foundations of Modern Query Languages for Graph Databases”, Renzo Angles, Marcelo Arenas, Pablo Barceló, Aidan Hogan, Juan Reutter, and Domagoj Vrgoc. č ACM Comput. Surv. 50, 5, Article 68 (September 2017), which is hereby incorporated by reference. Implementations are incorporated by reference in the appendix attached hereto. For example, the W3C Organization published several pages, including those on RDF 1.1 Primer, retrieved from the following URL [https://www.w3.org/TR/rdfll-primer/website] on Jun. 6, 2019 and attached hereto as pages 1 through 9 of Appendix 1, RDF Schema 1.1 retrieved from the following URL [https://www.w3.org/TR/rdf-schema/] on Jun. 6, 2019 and attached hereto as pages 10-25 of Appendix 1, OWL 2 Web Ontology Language Docket Overview (Second Edition), retrieved from the following URL [https://www.w3.org/TR/owl2-overview/] on Jun. 6, 2019 and attached hereto as pages 26-33 of Appendix 1, all of which are hereby incorporated by reference in their entireties for all that they teach. Leading implementations of property graph databases are Neo4j, retrieved from the following URL on Jun. 6, 2019 [https://neo4j.com/developer/kb/viewing-schema-data-with-apoc] and attached as pages 1-2 of Appendix 2, TigerGraph, retrieved from the following URL [https://doc.tigergraph.com/attachments/gsql_ddl_loading_v2.1.pdf] on Jun. 6, 2019 and attached as pages 3-4 of Appendix 2, Datastax Graph, retrieved from the following URL [https://docs.datastax.com/en/dse/6.7/dsedev/datastax_enterprise/graph/using/examineSchema.ht ml]on Jun. 6, 2019 and attached as pages 5-6 of Appendix 2, JanusGraph, retrieved from the following URL [https://docs.janusgraph.org/latest/schema.html] on Jun. 6, 2019 and attached as pages 7-13 of Appendix 2, and Tinkerpop, retrieved from the following URL, [http://tinkerpop.apache.org/] on Jun. 6, 2019 and attached as pages 14-19 of Appendix 2, all of which are hereby incorporated by reference in their entireties for all that they teach.

In an edge-labeled graph schema or ontology, classes can in some embodiments refer to RDFS or OWL Classes, object properties refer to RDFS property or OWL Object Property and datatype properties refer to RDFS property or OWL Datatype Property. In a property graph schema, in some embodiments, nodes refer to the label of the node, relationships refer to the labels of edges and properties are key-value pairs that are associated to nodes and relationships.

In one embodiment, the data structure representing the graph schema, whether an ontology, knowledge graph, property graph or the like, may, in an exemplary but non limiting case, be a table or a group of related tables. The data structure is stored on the server, and commands in the form of scripts is transmitted from server to the browsers of all participating remote computers, and the browsers transmit commands back to the server. The server converts the graph schema representative table to data representing graphical components for display, which are stored on the server. The browser calls down the graphic component data in order to display the graphic representation of the graph schema. The components may also contain text strings representing labelling or values to be associated with the graphical elements that are displayed. The graph schema may be comprised of data elements and data relationships among the elements. The graph schema data structure may be comprised of data representing concepts, attributes or relationships. In one embodiment, these elements and relationships may be represented by one or more RDF tuples, which can include RDF triples. The invention converts the data representing the elements and relationships, for example, RDF tuples, into a set of corresponding graphical component data, which are specific instances of circles, lines boxes, and labels. The graphical representation may be stored on the server and remote computers as a set of data structures, one for each graphical primitive, which includes its type (circle, line, label), its location (x,y), and for a line, its end point (a,b). For a circle, it can specify its size (a number). The data structure for an instance of a primitive will be comprised of one or more pointers to related instances of primitives. In this way, a circle indicating class, may point to a label instance, whose data structure has a “name”. Or there may be a pointer in the data structure instance to a line data structure instance, which has two endpoints points comprising it and a label “attribute name.” The connections between the components, i.e. the dependency lines between the circles are determined from the dependences present in the graph schema table entries.

The invention is able to produce two kinds of output important to the creation of graph databases and then populating them; Graph schema definition files and mapping files. A graph schema definition file is a text embodiment of a graph schema. This file details the contents and structure of the graph database. This is similar to a file containing SQL data definition language statements (SQL-DDL) such as CREATE TABLE, where in the relational setting a table and its constituent columns named and data types provided. For example, for edge-labeled graphs, files containing text for RDFS or OWL are graph schema definition files. The mapping files detail the contents and structure of an external data connection that is being integrated into the graph schema, as further described herein.

Editing the graph schema is accomplished by the browser receiving the graphical components, in the form of the graphical data structure instances and displaying them on the computer screen. When the user selects an item using the user interface of the computer operating the browser program, the browser can accept a command and transmit a corresponding edit command to the server. The command may be comprised of data representing a location on the browser screen, the identity of the graphic instance, or a selection of a label. These items may be accompanied with data representing move, or text input, or other commands. When the server receives a command to change an instance of what was selected on the browser, the server utilizes the stored graphical component data structures to identify where in the graph schema data structure such an edit should be made. Similarly, the user may select two instances of displayed nodes, and then select a command to establish a relationship between them. Further, the user can select a relationship by selecting the graphic representing the link between the nodes, and then the browser operates a script that permits the user to input a name to label the relationship. The browser then transmits to the server data representing the new instance of a relationship between the two selected nodes and its label.

Further, the graph schema can include as nodes, external sources of data. For example, a graph schema may have a node that delivers data from an external database. The database can be selected with its location specified in a menu. FIG. 15. These external databases may include at least relational databases, graph databases, document databases, hierarchical databases, key value databases, or object databases. In the preferred embodiment, another data structure representing a mapping is created, the mapping relating the characteristics of the node from the standpoint of the graph schema, to the characteristics of the external database. Mapping files contain a collection of entries. This may include the identification of an individual database, its meta-data and network access information. It will include entries that represent individual mappings, where a mapping identifies a node, edge or attribute in the graph schema and a corresponding data acquisition routine. In edge-labeled graph databases R2RML (Relational to RDF Markup Language, a W3C standard) is an example of a language used to define the syntax and semantics of the contents of a mapping file.

These mappings between the graph schema components and external database can be represented graphically utilizing the graph schema data structure, and incoming edit commands can modify the data structure representing the mapping. Likewise, the server can convert the data structures representing the mapping into a set of instances of graphical element data structure items. The external database may be characterized by metadata. The metadata represents the elements and relationships of content comprising the database. In one embodiment, the metadata may be a file, for example, a relational descriptor or other data file that defines the characteristics of the database. The metadata can be displayed to the user on the remote computer. FIG. 16.

The invention collects data and metadata from a database in order to use it to interface the external database with the graph schema. Further, the invention provides for the specification of mappings of data and metadata from a database to graph data corresponding to the graph schema. For example, FIG. 17 shows a user interface where specific data items are selected that are related to address data, and each string datatype is presented as well. These are selected by the user inputting a selection input into the interface. All of collecting data, metadata and the specification of mappings can comprise a computer code set that accesses a database and may apply transformations to the data returned by the database. The mapping can be utilized by receiving data representing a query that is applied to the connected database to generate and receive a query result that updates the graph schema data structure to refer to the query result as a concept mapped to an element comprising the graph data structure. For example, a node in the graph schema labeled “person-name” may be associated with a query to an employee database that returns the name(s) of employees. In one embodiment, the query is comprised of data representing computer code that expresses a data acquisition routine. That computer code may be expressed as a query, for example a SQL select-from-where query, and that query may further be embedded in a SQL VIEW statement. In one embodiment, the view and its mapping can be considered an object that is selectable. FIG. 18. The system can present an entire SQL code module that obtains the data, that can be input and edited through the browser operating on the remote computers. FIG. 19. Similarly other computer languages may be used to create a mapping. In the case of graph databases, it could be SPARQL, Cypher, Gremlin, Tigergraph's GSQL. In the case of general purpose computing languages, it could be in Java, Python and others. An example mapping from a concept in a graph schema to a SQL query is shown in FIG. 20. This shows how the data recovered from the database is related to an element in the graph schema. In other embodiments, the data can be retrieved from the database by specifying tables and columns, rather than full queries. FIG. 21 shows an example of an attribute in the graph schema being mapped to a table and column of a database. Each of the mappings between elements of the graph schema and the data sources can be stored in a file in order that it be individually managed. FIG. 22 shows a user interface presenting a user with mapping files already integrated with the graph schema, and a dialogue permitting the user to upload additional an additional mapping file into the schema.

In one embodiment, the system can be used to edit a mapping between a semantic ontology and a relational database. In this instance a data structure representing a graph representation of the mapping is first populated automatically. The relational descriptor file corresponding to the relational database is utilized to create a putative ontology, which can be represented by a data structure, but further, a set of graphical components for a display representation, as further explained in U.S. Pat. No. 8,719,252, incorporated herein by reference. This can then be displayed to the user by transmitting the data out to the remote computers. The system can then accept commands from the user operating the browser as an editing tool, and the user can edit the putative ontology in order that it be customized. The edited putative ontology can then be used to specify the mapping between elements of the graph schema and the contents of the relational database.

In one embodiment of the graph schema, the each Concept, Attribute and Relationship will be associated in the graph schema data structure with data representing the following features

-   -   ID: a unique identifier within the schema.     -   Data Type.     -   Preferred Label: the label is always used for the element.         -   Alternative Label: A user can attach alternative labels             (i.e. synonyms) that are used to call the element.         -   Definition: a description which defines what is the element.         -   Each label/description should have a language associated to             it.

Permission Roles: a user of the editor function can be assigned a status by the system which defines permission levels for editing as follows:

-   -   Owner: can assign permissions including owner, view permissions         and sharing, share (per user or public), edit, view and comment     -   Edit: can edit, view and comment     -   Comment: can comment and view     -   View: can view         -   Per user         -   Public via a URL accessible by anyone             Users must have an account in the system if they have an             Owner, Edit and Comment role. A registered and nonregistered             user can have a View role. A user who creates a graph schema             “document” is the owner of that schema. The owner of a             schema can assign a permission role to any user, including             multiple users.             In one embodiment, the system presents on the user interface             operating on the remote computer of a user a dialogue box             that takes as input the identity of a new user, and a             selection of the permission level permitted for that user.             See FIG. 12.

In one embodiment the system imports a graph schema in the OWL format as a .cap file. Import may be an additive process, where additional OWL formalisms may be added to a graph schema. In addition, the graph schema may exported into the OWL format. The graph schema can also be exported as an image (png, jpeg) and as a pdf.

An important aspect of collaborative editing of the graph schema is providing permission levels to different users. Consider the permission to edit, that is, a write privilege. For example, users may be authorized by parameters stored in a file or data structure associated with their account to have permission to edit a name or definition but not add a new Property or Class. Alternatively, editing Mappings can be permitted to be enabled/disabled independently of anything regarding the graph schema data structure itself. Examples of permission types include:

-   -   -   Only add things to certain classes.. Or certain parts of a             graph schema.         -   Only view certain parts of a graph schema.         -   Groups of users. Assign a group to a subgroup of users of a             graph schema.

    -   Catalog of EKG         -   Users can have public/private EKG

After a graph schema has been created, it can then be mapped to databases using the database metadata that describes the database, and even files that define the database schema.

Select Source Database Subset

-   -   Select Table         -   select attributes from table         -   This starts to show automatically on the canvas             -   Show the UML/ER version of the part that has been                 selected             -   The user can select the tables and the system will                 create a diagram that just has those tables     -   Primary Key (PK)         -   If they exist, then they show up as an icon         -   If it doesn't exist, the user can create them.     -   Foreign Key (FK)         -   If they exist, then they show up as a line between the             tables         -   If it doesn't exist, the user can create them, by drawing             the line

-   Create     -   -   VIEW: In this function, the user can write the SQL query and             then show the view as the table icon so that attributes will             appear.

In addition, the user can specify the PK and FK

-   What to do with NULL values

Every attribute will specify if the attribute can be NULL or not with an icon. If it can be null, then specify what the value should be.

-   -   When a Concept has been created         -   select an existing table/view with PK from the organized             source databases         -   select a table from the original source database or create             sql view     -   If a Concept has Attributes already created         -   after a Concept has been mapped, create line connecting the             source table attributes to the target graph schema Attribute

-   If a Concept does not have Attributes     -   Take the attributes from the source table and drag them to the         Concept node.

-   Mappings to Relationships     -   If a Foreign Key (FK) has been created, then create line between         the FK and the Relationship.     -   If a FK doesn't exist, then the attribute which represents the         FK is the one that needs to be mapped to the Relationship

-   Alternatively, map a source Data Property to a target Object     Property. In this embodiment, the system permits the user to edit     the R2RML manually to use the template URI as the object.

View Mappings: The system permits ways to show the graph schema in various ways, including any mappings. Several ways are described below:

-   -   Ontology View         -   The system shows the entire graph schema.         -   The user can select on Concept/Attribute to view the             attribute             -   The system shows just the table/attribute/view as a                 string             -   The system shows graphically the links to the source                 database     -   Database View         -   The system shows the entire organized Source Database         -   The user can select on a table/attribute/view             -   The system shows just the predetermined name             -   The system shows graphically the links to the ontology     -   Preview a mapping in graph and tabular form     -   Download the mapping as as spreadsheet or XLS file     -   Export the mapping as a GOOGLE™ sheet         -   In addition, colors may be used when displaying the mapping             line to indicate the editing status of a mapping element,             for example:         -   green: approved         -   yellow: submitted for approval         -   red: development             1. User Input is Captured

The user interacts with the diagram by clicking and dragging a circle. The point at which this event is captured is customizable. The event can be captured several times per second whenever the “drag” event is called (as is currently implemented), or the event can be captured only at the release of the mouse button (which would only update other clients when the circle is dropped in its final position). The JSON data for the circle is specifically what is captured.

2. Operational Transformation Request Formed

The client submits a request to the server to make a change to the diagram using Operational Transformation. The client passes the original JSON object of the circle as well as the updated JSON object to the server. A basic flag is also specified that tells the server what kind of change this is (update, delete, etc.).

3. Server Receives the Event

The server receives the event, parses the information, and updates the diagram document JSON. This is done automatically by ShareDB. This is an ideal way to implement granular permissions, because the event can be “cancelled” based on user permissions.

4. Server Sends Out the Updates

The server sends any updates it has received out to all of the clients.

5. Clients Update the Diagram

The clients receive the updates, parse the data, and refresh the diagram as needed. Clients that initiated specific events (like dragging) should choose to ignore their own updates to avoid strange or choppy behavior. This is because the server will send the updates from a client back to the same client, in addition to the rest of the clients.

The graph schema data structure may be output in several ways. First, the data structure, as a table or series of tables may be stored as a data file on mass storage device. This may be performed periodically, with automatically generated filenames so that the evolution of the schema can be maintained. In addition, the graph schema can be converted to outputs to be used in other contexts, for example, as a file defining a set of RDF tuples. The system can also utilize the schema data structure so that the system interfaces automatically between sources of data, including databases, a graph data structures and queries operating on the graph data structure.

In one example embodiment, the operation of the invention by a user, or collaboratively, a set of users to create and develop a graph schema and optionally mappings to a database, form the following data structures. There are five data structures, all expressed in the preferred embodiment as JSON objects. These data structures are presented as examples of one exemplary embodiment but are not intended to be limiting to the data structures that may be used.

-   1) User data is stored in a MySQL table. -   2) the graph schema, which itself may be the union of one or more     identically structured JSON objects stored in MongoDB -   3) a complex data structure for storing mappings. The component     parts of the representation of mappings are stored in a MySQL     tables. By complex data structure, it is meant that it is a data     structure that contains a number of sub-data structures. -   4) a complex data structure storing meta-data and individual strings     in a chat thread. -   5) a complex data structure that stores, as a log, for example, a     JSON file, CVS file, SVN or GIT file, the individual changes made to     the graph schema or the mappings. In aggregate, the record of these     changes, known in the art as incremental changes, may be used to     reconstruct, or, deconstruct, the creation of the graph schema and     the mappings.

Note that graph schema ownership, editing privileges and notification status with respect to chat threads are stored as a JSON object within a row of a MySQL database table. Each document is stored in MySQL table and in a Mongodb collection.

In one embodiment, the each graph schema, its associated user status and accumulated chat history is stored as a complex data structure with sub-data structures stored as tuples in MySQL and documents in MongoDB. The sub-data structures are identified as belonging to the same complex data structure using database key values. There is a one-to-one relationship between a row in the documents table and a collection of a document in mongoDB. Document Table in MySQL:

documents: { name: ‘documents’, creationParams: [‘id VARCHAR(255) PRIMARY KEY’, ‘title VARCHAR(255)’, ‘iri VARCHAR(1000)’, ‘iriPrefix VARCHAR(255)’, ‘description TEXT’, ‘owner VARCHAR(255)’, ‘ownerCommentNotification VARCHAR(255)’,‘lastModified INT’, ‘dateCreated INT’, ‘dateDeleted INT’, ‘parent VARCHAR(255)’, ‘deleted BOOLEAN’, ‘needForceDirectedLayout BOOLEAN’, ‘relBugFixed BOOLEAN’], indexQueries. [‘CREATE INDEX owner_index ON documents (owner)’, ‘CREATE INDEX parent_index ON documents (parent)’] }

In the preferred embodiment, the graph schema has its own data structure. Each component of the graph schema, node, edge, property (edge-label), and attributes are given unique ids, “id” and “nodeId”. Timestamps and identity of the user who last updated the component is recorded [in the object]. Similarly labels, pointers to labels, or other label proxies are stored in the object. As needed by the visualization system, details of where and how individual components of the graph schema are recorded.

The diagram is stored as a JSON document in Mongodb, where the Mongodb collection name is the document ID.

Graph Schema Data Structure:

{ “_id”: “data0”, // slot name “slot”: 0, // slot number “nodes”: { // contains all the nodes in data0 “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”: { // indexed by node ID “id”: “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”, “nodeType”: “concept”, “slot”: “data0”, “label”: “c1”, “description”: “”, “fields”: [{ “id”: “1f527394-577f-4142-b9a4-45f200f294dd”, “title”: “foo”, “text”: “bar” }, ...], “lastUpdatedBy”: “60a374cd-1167-453d-a063-d04d952939c4”, // user ID “deleted”: false }, ... }, “links”: { // contains all links that is connected to nodes in this slot “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”: { // Indexed by node ID “nodeType”: “link”, “nodeId”: “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”, “slot”: “data0”, “peers”: [ // stores all links whose source and target are different { // Sample link “linkId”: “link-f7c92689-499a-44b4-8e37-64579d726f8c”, “nodeId”: “node-9c8ac7b9-70a8-4fb2-8c3b-fabdd1282e1c”, // target node ID or child node ID if this link is in “parents” or “children” array “myNodeId”: “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”, // my node ID “sourceNodeId”: “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”, // source node ID or parent node ID if this link is in “parents” or “children” array “label”: “op1”, “description”: “”, “arrayName”: “peers”, “linkType”: “peer”, “cardinalityType”: { “id”: 0, “title”: “min” }, “cardinality”: “1”, “fields”: [ ], “color”: “#fdc344” } ], “self”: [ ], // Stores all links whose source and target are the same “parents”: [ ], // Stores all links that give this node a parent “children”: [ ], // Stores all links that give this node a child “lastUpdatedBy”: “60a374cd-1167-453d-a063-d04d952939c4” }, ... }, “coordinates”: { // Stores coordinates of nodes and self links “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”: { // Indexed by node ID or link ID “nodeType”: “concept”, “nodeId”: “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”, “positionX”: −51, “positionY”: −26, “slot”: “data0”, “lastUpdatedBy”: “60a374cd-1167-453d-a063-d04d952939c4” }, ... }, “attributeGroups”: { // Stores all attributes for nodes or links in this slot “node-f131c0ac-a5fc-4313-812d-d5affac1c7e6”: { // indexed by node ID or link ID. This object contains all attributes for this particular node. “groupId”: “attrGrp-f1683d62-38b1-4152-916f-7440af2d375e”, “nodeType”: “attrGrp”, “slot”: “data0”, “parentId”: “node-f131c0ac-a5fc-4313-812d-d5affac1c7e6”, “attributeList”: [ { // Sample attribute “id”: “attr-9f75f480-c8f1-4290-b4b1-bfdcbadaeadf”, “fields”: [ ], “nodeType”: “attribute”, “label”: “dp1”, “description”: “”, “xsdDataType”: { “id”: 9, “title”: “dateTime” }, “cardinalityType”: { “id”: 0, “title”: “min” }, “cardinality”: “40”, “groupId”: “attrGrp-f1683d62-38b1-4152-916f-7440af2d375e” } ], “lastUpdatedBy”: “60a374cd-1167-453d-a063-d04d952939c4” }, ... }, “iri”: { // Stores IRIs for all nodes, links, and attribtues in this slot. “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”: { “iri”: “http://www.gra.fo/schema/untitled-ekg#c1”, “hasEdited”: true }, “link-f7c92689-499a-44b4-8e37-64579d726f8c”: { “iri”: “http://www.gra.fo/schema/untitled-ekg#op1”, “hasEdited”: true }, “attr-9f75f480-c8f1-4290-b4b1-bfdcbadaeadf”: { “iri”: “http://www.gra.fo/schema/untitled-ekg#dp1”, “hasEdited”: true }, “linkattr-f5957d12-28fb-43d1-acd6-11e4fbfb6c5e”: { “iri”: “http://www.gra.fo/schema/untitled-ekg#linkattribute3”, “hasEdited”: true } }, “additionalPrefixes”: [ // Additional prefixes for the document. These are the default values. {“prefix”: “owl”, “iri”: “http://www.w3.org/2002/07/owl#”}, {“prefix”: “rdf”, “iri”: “http://www.w3.org/1999/02/22-rdf-syntax-ns#”}, {“prefix”: “xml”, “iri”: “http://www.w3.org/XML/1998/namespace”}, {“prefix”: “xsd”, “iri”: “http://www.w3.org/2001/XMLSchema#”}, {“prefix”: “rdfs”, “iri”: “http://www.w3.org/2000/01/rdf-schema#”}, {“prefix”: “skos”, “iri”: “http://www.w3.org/2004/02/skos/core#”}, {“prefix”: “dc”, “iri”: “http://purl.org/dc/elements/1.1/”}, {“prefix”: “foaf”, “iri”: “http://xmlns.com/foaf/spec/”} ], “mappings”: { // contains all mappings for CARS in this slot “node-e9182386-d992-4b99-b67a-cb0a41a89f7f”: [ // contains all mappings for this node { // A sample mapping object. There are 6 different types of mappings, each requiring different information. mappingId: “http://capsenta.com/mappings#TripleMap_SuccesfulOrderStatus”, mappingType: “CV”, dbId: “1ea24423-897e-42e5-9336-3d12c331e799”, // source database ID fromTemplate: “http://www.arbonne.com/data/orderstatus/{[OrderStatusId]}”, viewQuery: “select OrderStatusId from OrderStatus where Name not IN (‘cancelled’, ...”, imported: true } ], ... } “_o”: “5ba5ded36fe18e39e8a73e6c” // Unique ID given by mongoDB. }

A mapping from a data source into the graph schema may be stored as a complex data structure. Each mapping stored in MongoDB comes from a source database (also called customer database). Mapping can include related tables in MySQL. A mapping may associate a component of the graph schema with a particular database. The first sub data structure stores detailed information concerning the identify, network connectivity and authorization for a database. This can include information about the source database of a mapping.

Mappings Structure

customer_databases: { name: ‘customer_databases’, creationParams: [ ‘id CHAR(36) PRIMARY KEY’, ‘display_name VARCHAR(255) NOT NULL’, ‘owner_id VARCHAR(255) NOT NULL’, ‘date_created INT NOT NULL’, “db_type VARCHAR(20) CHECK (db_type IN (‘unknown’, ‘postgres', ‘mysql’, ‘oracle’, ‘sqlserver’, ‘saphana’, ‘hive’, ‘db2’, ‘h2’))”, ‘db_name VARCHAR(255)’, ‘db_host VARCHAR(255)’, ‘db_port INT’, ‘db_user VARCHAR(255)’, ‘imported BOOLEAN’ ], indexQueries: [ ‘CREATE INDEX IDX_CUST_DB_SEARCH ON customer_databases (display_name, owner_id, imported)’ ] }

In addition, the system may be comprised of an object that stores which individual databases have mappings connecting them to which individual graph schema. The system can store which document a source database belongs to. In one embodiment, there is a many-to-one relationship between source databases and a document.

Mapping Management Structure:

cust_db_doc_correlations: { name: ‘cust_db_doc_correlations’, creationParams: [ ‘cust_db_id CHAR(36) NOT NULL’, ‘ekg_doc_id VARCHAR(255) NOT NULL’, ‘date_last_imported INT NOT NULL’, ‘imported_file_name VARCHAR(512) NOT NULL’, ‘PRIMARY KEY (cust_db_id, ekg_doc_id)’ ] indexQueries: [ // reverse index helps when queries originate in doc side ‘CREATE INDEX IDX_REVERSE_DOC_DB ON cust_db_doc_correlations (ekg_doc_id, cust_db_id)’, ‘ALTER TABLE cust_db_doc_correlations ADD CONSTRAINT fk_db_doc_correl_cust_db FOREIGN KEY (cust_db_id) REFERENCES customer_databases(id) ON DELETE RESTRICT ON UPDATE CASCADE’, ‘ALTER TABLE cust_db_doc_correlations ADD CONSTRAINT fk_db_doc_correl_doc FOREIGN KEY (ekg_doc_id) REFERENCES documents(id) ON DELETE RESTRICT ON UPDATE CASCADE’ ] }

The system supports chat channels that establish a conversation regarding the elements being edited. These conversations, or series of comments are maintained in a data structure that links them to the elements in the graph schema they refer to. A conversation, or chat thread, is a collection of comments, so there is a one-to-many relationship between conversations and comments.

Comment Tables in My SQL

conversations: { name: ‘conversations’, creationParams: [ ‘id CHAR(36) PRIMARY KEY’, ‘documentId CHAR(36) NOT NULL’, ‘userId VARCHAR(36) NOT NULL’, ‘nodeId VARCHAR(50) NOT NULL’, ‘subId VARCHAR(50) NOT NULL’, ‘resolved BOOLEAN NOT NULL’, ‘dateResolved INT NOT NULL’, ‘dateUnresolved INT’, ‘lastResolveUserId VARCHAR(36)’, ‘lastUnresolveUserId VARCHAR(36)’ ] } A Comment Associated with a Conversation.

comments: { name: ‘comments’, creationParams: [ ‘id CHAR(36) PRIMARY KEY’, ‘conversationId CHAR(36) NOT NULL’, ‘isInitialComment BOOLEAN NOT NULL’, ‘userId CHAR(36) NOT NULL’, ‘dateCreated INT NOT NULL’, ‘dateLastEdited INT NOT NULL’ ], indexQueries: [‘ALTER TABLE comments ADD CONSTRAINT fk_conversation_id FOREIGN KEY (conversationId) REFERENCES conversations(id) ON DELETE CASCADE’] } The actual content for a comment. One-to-one relationship between comments and comment contents.

comment_contents: { name: ‘comment_contents’, creationParams: [ ‘id CHAR(36) PRIMARY KEY’, ‘comment VARCHAR(255)’ ], indexQueries: [‘ALTER TABLE comment_contents ADD CONSTRAINT fk_comment_id FOREIGN KEY (id) REFERENCES comments(id) ON DELETE CASCADE’] }

In addition, individual comments in a chat thread can be marked as open or resolved issues. This can track if the conversation is resolved or not. One-to-one relationship between conversations and this.

conversation_resolutions: { name: ‘conversation_resolutions’, creationParams: [ ‘id CHAR(36) PRIMARY KEY’, ‘conversationId CHAR(36) NOT NULL’, ‘isResolve BOOLEAN NOT NULL’, ‘userId CHAR(36) NOT NULL’, ‘dateChanged INT NOT NULL’, ], indexQueries: [‘ALTER TABLE conversation_resolutions ADD CONSTRAINT fk_conversation_conversation_resolutions_id FOREIGN KEY (conversationId) REFERENCES conversations(id) ON DELETE CASCADE’] } Another object can tracks if a user has seen a comment or not. This is used to display the number of unseen comments.

user_read_comments: { name: ‘user_read_comments’, creationParams: [ ‘commentId CHAR(36) NOT NULL’, ‘userId CHAR(36) NOT NULL’, ‘dateRead INT NOT NULL’, ‘PRIMARY KEY (commentId, userId)’ ] }

Complex data structure may be used to store information, for example as CVS. Each revision is stored in a revision table and a mongoDB document. For every 10 revisions, a full snapshot is saved. A full snapshot is always saved for the first revision of the graph schema document. A full snapshot is simply all data that is stored in {document ID} collection in mongoDB. A revision that is not a full snapshot is a diff of the previous revision. This is calculated by GenerateNewRevision lambda. However, dateCreated must be unique for each revision in a document. In the MySQL revision table, each row has one-to-one relationship with a mongoDB document.

Revisions Structure

revisions: { name: ‘revisions’, creationParams: [‘id VARCHAR(255) PRIMARY KEY’, ‘documentId VARCHAR(255)’, ‘title VARCHAR(255)’, ‘dateCreated INT, ‘author VARCHAR(255)’, ‘authorId VARCHAR(255)’, ‘notes LONGTEXT’, ‘isFullSnapshot BOOLEAN’], indexQueries: [‘CREATE INDEX revision_doc_id ON revisions (documentId)’] } In the MongoDB revision collection, the Collection name is {document ID}-revisions and each MongoDB document inside the collection is a revision. Sample Revision Document:

{ “_id”: “5cef1b41cc57ef5e28d53dd0”, // ID generated by mongoDB “id”: “280b02d7-e904-4a5d-86f2-25ddf76ae4eb”, // revision ID “data”:[...] // Revision data. This will be an array if the revision is a full snapshot. It will be an object otherwise. } Operating Environment:

The system is typically comprised of a central server that is connected by a data network to a user's computer. The central server may be comprised of one or more computers connected to one or more mass storage devices. The precise architecture of the central server does not limit the claimed invention. Further, the user's computer may be a laptop or desktop type of personal computer. It can also be a cell phone, smart phone or other handheld device, including a tablet. The precise form factor of the user's computer does not limit the claimed invention. Examples of well-known computing systems, environments, and/or configurations that may be suitable for use with the invention include, but are not limited to, personal computers, server computers, hand-held computers, laptop or mobile computer or communications devices such as cell phones, smart phones, and PDA's, multiprocessor systems, microprocessor-based systems, set top boxes, programmable consumer electronics, network PCs, minicomputers, mainframe computers, distributed computing environments that include any of the above systems or devices, and the like. Indeed, the terms “computer,” “server,” and the like may be used interchangeably herein, and may refer to any of the above devices and systems.

The user environment may be housed in the central server or operatively connected to it remotely using a network. In one embodiment, the user's computer is omitted, and instead an equivalent computing functionality is provided that works on a server. In this case, a user would log into the server from another computer over a network and access the system through a user environment, and thereby access the functionality that would in other embodiments, operate on the user's computer. Further, the user may receive from and transmit data to the central server by means of the Internet, whereby the user accesses an account using an Internet web-browser and browser displays an interactive web page operatively connected to the central server. The server transmits and receives data in response to data and commands transmitted from the browser in response to the customer's actuation of the browser user interface. Some steps of the invention may be performed on the user's computer and interim results transmitted to a server. These interim results may be processed at the server and final results passed back to the user.

The Internet is a computer network that permits customers operating a personal computer to interact with computer servers located remotely and to view content that is delivered from the servers to the personal computer as data files over the network. In one kind of protocol, the servers present webpages that are rendered on the customer's personal computer using a local program known as a browser. The browser receives one or more data files from the server that are displayed on the customer's personal computer screen. The browser seeks those data files from a specific address, which is represented by an alphanumeric string called a Universal Resource Locator (URL). However, the webpage may contain components that are downloaded from a variety of URL's or IP addresses. A website is a collection of related URL's, typically all sharing the same root address or under the control of some entity. In one embodiment different regions of the simulated space displayed by the browser have different URL's. That is, the webpage encoding the simulated space can be a unitary data structure, but different URL's reference different locations in the data structure. The user computer can operate a program that receives from a remote server a data file that is passed to a program that interprets the data in the data file and commands the display device to present particular text, images, video, audio and other objects. In some embodiments, the remote server delivers a data file that is comprised of computer code that the browser program interprets, for example, scripts. The program can detect the relative location of the cursor when the mouse button is actuated, and interpret a command to be executed based on location on the indicated relative location on the display when the button was pressed. The data file may be an HTML document, the program a web-browser program and the command a hyper-link that causes the browser to request a new HTML document from another remote data network address location. The HTML can also have references that result in other code modules being called up and executed, for example, Flash or other native code.

The invention may also be entirely executed on one or more servers. A server may be a computer comprised of a central processing unit with a mass storage device and a network connection. In addition a server can include multiple of such computers connected together with a data network or other data transfer connection, or, multiple computers on a network with network accessed storage, in a manner that provides such functionality as a group. Practitioners of ordinary skill will recognize that functions that are accomplished on one server may be partitioned and accomplished on multiple servers that are operatively connected by a computer network by means of appropriate inter process communication. In one embodiment, a user's computer can run an application that causes the user's computer to transmit a stream of one or more data packets across a data network to a second computer, referred to here as a server. The server, in turn, may be connected to one or more mass data storage devices where the database is stored. In addition, the access of the web site can be by means of an Internet browser accessing a secure or public page or by means of a client program running on a local computer that is connected over a computer network to the server. A data message and data upload or download can be delivered over the Internet using typical protocols, including TCP/IP, HTTP, TCP, UDP, SMTP, RPC, FTP or other kinds of data communication protocols that permit processes running on two respective remote computers to exchange information by means of digital network communication. As a result a data message can be one or more data packets transmitted from or received by a computer containing a destination network address, a destination process or application identifier, and data values that can be parsed at the destination computer located at the destination network address by the destination application in order that the relevant data values are extracted and used by the destination application. The precise architecture of the central server does not limit the claimed invention. In addition, the data network may operate with several levels, such that the user's computer is connected through a fire wall to one server, which routes communications to another server that executes the disclosed methods.

The server can execute a program that receives the transmitted packet and interpret the transmitted data packets in order to extract database query information. The server can then execute the remaining steps of the invention by means of accessing the mass storage devices to derive the desired result of the query. Alternatively, the server can transmit the query information to another computer that is connected to the mass storage devices, and that computer can execute the invention to derive the desired result. The result can then be transmitted back to the user's computer by means of another stream of one or more data packets appropriately addressed to the user's computer. In addition, the user's computer may obtain data from the server that is considered a website, that is, a collection of data files that when retrieved by the user's computer and rendered by a program running on the user's computer, displays on the display screen of the user's computer text, images, video and in some cases outputs audio. The access of the website can be by means of a client program running on a local computer that is connected over a computer network accessing a secure or public page on the server using an Internet browser or by means of running a dedicated application that interacts with the server, sometimes referred to as an “app.” The data messages may comprise a data file that may be an HTML document (or other hypertext formatted document file), commands sent between the remote computer and the server and a web-browser program or app running on the remote computer that interacts with the data received from the server. The command can be a hyper-link that causes the browser to request a new HTML document from another remote data network address location. The HTML can also have references that result in other code modules being called up and executed, for example, Flash, scripts or other code. The HTML file may also have code embedded in the file that is executed by the client program as an interpreter, in one embodiment, Javascript. As a result a data message can be a data packet transmitted from or received by a computer containing a destination network address, a destination process or application identifier, and data values or program code that can be parsed at the destination computer located at the destination network address by the destination application in order that the relevant data values or program code are extracted and used by the destination application.

The invention may also be practiced in distributed computing environments where tasks are performed by remote processing devices that are linked through a communications network. In a distributed computing environment, program modules may be located in both local and remote computer storage media including memory storage devices. Practitioners of ordinary skill will recognize that the invention may be executed on one or more computer processors that are linked using a data network, including, for example, the Internet. In another embodiment, different steps of the process can be executed by one or more computers and storage devices geographically separated by connected by a data network in a manner so that they operate together to execute the process steps. In one embodiment, a user's computer can run an application that causes the user's computer to transmit a stream of one or more data packets across a data network to a second computer, referred to here as a server. The server, in turn, may be connected to one or more mass data storage devices where the database is stored. The server can execute a program that receives the transmitted packet and interpret the transmitted data packets in order to extract database query information. The server can then execute the remaining steps of the invention by means of accessing the mass storage devices to derive the desired result of the query. Alternatively, the server can transmit the query information to another computer that is connected to the mass storage devices, and that computer can execute the invention to derive the desired result. The result can then be transmitted back to the user's computer by means of another stream of one or more data packets appropriately addressed to the user's computer. In one embodiment, a relational database may be housed in one or more operatively connected servers operatively connected to computer memory, for example, disk drives. In yet another embodiment, the initialization of the relational database may be prepared on the set of servers and the interaction with the user's computer occur at a different place in the overall process.

The method described herein can be executed on a computer system, generally comprised of a central processing unit (CPU) that is operatively connected to a memory device, data input and output circuitry (IO) and computer data network communication circuitry. Computer code executed by the CPU can take data received by the data communication circuitry and store it in the memory device. In addition, the CPU can take data from the I/O circuitry and store it in the memory device. Further, the CPU can take data from a memory device and output it through the IO circuitry or the data communication circuitry. The data stored in memory may be further recalled from the memory device, further processed or modified by the CPU in the manner described herein and restored in the same memory device or a different memory device operatively connected to the CPU including by means of the data network circuitry. In some embodiments, data stored in memory may be stored in the memory device, or an external mass data storage device like a disk drive. In yet other embodiments, the CPU may be running an operating system where storing a data set in memory is performed virtually, such that the data resides partially in a memory device and partially on the mass storage device. The CPU may perform logic comparisons of one or more of the data items stored in memory or in the cache memory of the CPU, or perform arithmetic operations on the data in order to make selections or determinations using such logical tests or arithmetic operations. The process flow may be altered as a result of such logical tests or arithmetic operations so as to select or determine the next step of a process. For example, the CPU may obtain two data values from memory and the logic in the CPU determine whether they are the same or not. Based on such Boolean logic result, the CPU then selects a first or a second location in memory as the location of the next step in the program execution. This type of program control flow may be used to program the CPU to determine data, or select a data from a set of data. The memory device can be any kind of data storage circuit or magnetic storage or optical device, including a hard disk, optical disk or solid state memory. The IO devices can include a display screen, loudspeakers, microphone and a movable mouse that indicate to the computer the relative location of a cursor position on the display and one or more buttons that can be actuated to indicate a command.

The computer can display on the display screen operatively connected to the I/O circuitry the appearance of a user interface. Various shapes, text and other graphical forms are displayed on the screen as a result of the computer generating data that causes the pixels comprising the display screen to take on various colors and shades or brightness. The user interface may also display a graphical object referred to in the art as a cursor. The object's location on the display indicates to the user a selection of another object on the screen. The cursor may be moved by the user by means of another device connected by I/O circuitry to the computer. This device detects certain physical motions of the user, for example, the position of the hand on a flat surface or the position of a finger on a flat surface. Such devices may be referred to in the art as a mouse or a track pad. In some embodiments, the display screen itself can act as a trackpad by sensing the presence and position of one or more fingers on the surface of the display screen. When the cursor is located over a graphical object that appears to be a button or switch, the user can actuate the button or switch by engaging a physical switch on the mouse or trackpad or computer device or tapping the trackpad or touch sensitive display. When the computer detects that the physical switch has been engaged (or that the tapping of the track pad or touch sensitive screen has occurred), it takes the apparent location of the cursor (or in the case of a touch sensitive screen, the detected position of the finger) on the screen and executes the process associated with that location. As an example, not intended to limit the breadth of the disclosed invention, a graphical object that appears to be a two dimensional box with the word “enter” within it may be displayed on the screen. If the computer detects that the switch has been engaged while the cursor location (or finger location for a touch sensitive screen) was within the boundaries of a graphical object, for example, the displayed box, the computer will execute the process associated with the “enter” command. In this way, graphical objects on the screen create a user interface that permits the user to control the processes operating on the computer.

In some instances, especially where the user computer is a mobile computing device used to access data through the network the network may be any type of cellular, IP-based or converged telecommunications network, including but not limited to Global System for Mobile Communications (GSM), Time Division Multiple Access (TDMA), Code Division Multiple Access (CDMA), Orthogonal Frequency Division Multiple Access (OFDM), General Packet Radio Service (GPRS), Enhanced Data GSM Environment (EDGE), Advanced Mobile Phone System (AMPS), Worldwide Interoperability for Microwave Access (WiMAX), Universal Mobile Telecommunications System (UMTS), Evolution-Data Optimized (EVDO), Long Term Evolution (LTE), Ultra Mobile Broadband (UMB), Voice over Internet Protocol (VoIP), Unlicensed Mobile Access (UMA), any form of 802.11.xx or Bluetooth.

Computer program logic implementing all or part of the functionality previously described herein may be embodied in various forms, including, but in no way limited to, a source code form, a computer executable form, and various intermediate forms (e.g., forms generated by an assembler, compiler, linker, or locator.) Source code may include a series of computer program instructions implemented in any of various programming languages (e.g., an object code, an assembly language, or a high-level language such as Javascript, C, C++, JAVA, or HTML or scripting languages that are executed by Internet web-broswers) for use with various operating systems or operating environments. The source code may define and use various data structures and communication messages. The source code may be in a computer executable form (e.g., via an interpreter), or the source code may be converted (e.g., via a translator, assembler, or compiler) into a computer executable form.

The invention may be described in the general context of computer-executable instructions, such as program modules, being executed by a computer. Generally, program modules include routines, programs, objects, binary components that, when executed by the CPU, perform particular tasks or implement particular abstract data types and when running, may generate in computer memory or store on disk, various data structures. A data structure may be represented in the disclosure as a manner of organizing data, but is implemented by storing data values in computer memory in an organized way. Data structures may be comprised of nodes, each of which may be comprised of one or more elements, encoded into computer memory locations into which is stored one or more corresponding data values that are related to an item being represented by the node in the data structure. The collection of nodes may be organized in various ways, including by having one node in the data structure being comprised of a memory location wherein is stored the memory address value or other reference, or pointer, to another node in the same data structure. By means of the pointers, the relationship by and among the nodes in the data structure may be organized in a variety of topologies or forms, including, without limitation, lists, linked lists, trees and more generally, graphs. The relationship between nodes may be denoted in the specification by a line or arrow from a designated item or node to another designated item or node. A data structure may be stored on a mass storage device in the form of data records comprising a database, or as a flat, parsable file. The processes may load the flat file, parse it, and as a result of parsing the file, construct the respective data structure in memory. In other embodiment, the data structure is one or more relational tables stored on the mass storage device and organized as a relational database.

The computer program and data may be fixed in any form (e.g., source code form, computer executable form, or an intermediate form) either permanently or transitorily in a tangible storage medium, such as a semiconductor memory device (e.g., a RAM, ROM, PROM, EEPROM, or Flash-Programmable RAM), a magnetic memory device (e.g., a diskette or fixed hard disk), an optical memory device (e.g., a CD-ROM or DVD), a PC card (e.g., PCMCIA card, SD Card), or other memory device, for example a USB key. The computer program and data may be fixed in any form in a signal that is transmittable to a computer using any of various communication technologies, including, but in no way limited to, analog technologies, digital technologies, optical technologies, wireless technologies, networking technologies, and internetworking technologies. The computer program and data may be distributed in any form as a removable storage medium with accompanying printed or electronic documentation (e.g., a disk in the form of shrink wrapped software product or a magnetic tape), preloaded with a computer system (e.g., on system ROM or fixed disk), or distributed from a server, website or electronic bulletin board or other communication system (e.g., the Internet or World Wide Web.) It is appreciated that any of the software components of the present invention may, if desired, be implemented in ROM (read-only memory) form. The software components may, generally, be implemented in hardware, if desired, using conventional techniques.

It should be noted that the flow diagrams are used herein to demonstrate various aspects of the invention, and should not be construed to limit the present invention to any particular logic flow or logic implementation. The described logic may be partitioned into different logic blocks (e.g., programs, modules, functions, or subroutines) without changing the overall results or otherwise departing from the true scope of the invention. Oftentimes, logic elements may be added, modified, omitted, performed in a different order, or implemented using different logic constructs (e.g., logic gates, looping primitives, conditional logic, and other logic constructs) without changing the overall results or otherwise departing from the true scope of the invention. Where the disclosure refers to matching or comparisons of numbers, values, or their calculation, these may be implemented by program logic by storing the data values in computer memory and the program logic fetching the stored data values in order to process them in the CPU in accordance with the specified logical process so as to execute the matching, comparison or calculation and storing the result back into computer memory or otherwise branching into another part of the program logic in dependence on such logical process result. The locations of the stored data or values may be organized in the form of a data structure.

The described embodiments of the invention are intended to be exemplary and numerous variations and modifications will be apparent to those skilled in the art. All such variations and modifications are intended to be within the scope of the present invention as defined in the appended claims. Although the present invention has been described and illustrated in detail, it is to be clearly understood that the same is by way of illustration and example only, and is not to be taken by way of limitation. It is appreciated that various features of the invention which are, for clarity, described in the context of separate embodiments may also be provided in combination in a single embodiment. Conversely, various features of the invention which are, for brevity, described in the context of a single embodiment may also be provided separately or in any suitable combination. It is appreciated that the particular embodiment described in the Appendices is intended only to provide an extremely detailed disclosure of the present invention and is not intended to be limiting.

The foregoing description discloses only exemplary embodiments of the invention. Modifications of the above disclosed apparatus and methods which fall within the scope of the invention will be readily apparent to those of ordinary skill in the art. Accordingly, while the present invention has been disclosed in connection with exemplary embodiments thereof, it should be understood that other embodiments may fall within the spirit and scope of the invention as defined by the following claims. 

The invention claimed is:
 1. A method executed by a computer system for operating a graph schema data structure stored in memory, said graph schema data structure comprising data elements and data relationships among the data elements, said method comprising: receiving as input a location reference to at least one connected database connected by a data network to a server and storing the location reference in the graph schema data structure as a database location; generating mapping data by using a database schema retrieved from the database location to generate an ontology associated with the connected database associated with the graph schema data structure; receiving as input a first data that comprises modifications of the graph schema data structure, the modifications indicating one or more selections of one or more graphical data structure instances presented as one or more graphical component data structures on a user interface in a browser, each of the one or more selections being representative of a graphical change in the graph schema data structure that corresponds to another change in the connected database; receiving data representing a plurality of edits to the graph schema data structure; storing incremental changes to reconstruct or deconstruct creation of the graph schema data structure associated with the ontology responsive to the input and other inputs associated with the plurality of edits, the incremental changes being responsive to collaborative editing of the graph schema via a plurality of graph schema editors, each of the plurality of graph schema editors being associated with one of a plurality of remote computing devices that provide data representing the input and other inputs associated with the plurality of edits; establishing a chat channel configured to work with at least one of the plurality of edits, the chat channel being associated with the data element of the graph schema data structure and the chat channel being opened when the data element is selected; displaying in a user interface the incremental changes of the graph schema data structure based on the collaborative editing data received from the plurality of remote computing devices; receiving data representing a query that is applied to the connected database to refer to a query result based on the query as a concept mapped to an element comprising at least a portion of the graph data structure; and using the first input data to modify the graph schema data structure responsive to the at least one edit associated with the chat channel.
 2. The method of claim 1 wherein the ontology is a putative ontology corresponding to the connected database.
 3. The method of claim 2 where the mapping data is comprised of a SQL query.
 4. The method of claim 2 where the mapping data is comprised of a SQL View.
 5. The method of claim 2 where the mapping data is comprised of a graph query.
 6. The method of claim 2 where the generating the mapping step is comprised of receiving input metadata that represents characteristics of the connected database.
 7. The method of claim 1 further comprising updating the graph schema data structure with references to at least one content in the database using the generated mapping.
 8. The method of claim 1 where the query is a VIEW construct and the database is a relational database.
 9. The method of claim 1 where the query is comprised of computer code expressing a data acquisition routine.
 10. The method of claim 1 where the graph schema data structure is comprised of data representing nodes, edges and attributes associated with the nodes and edges.
 11. The method of claim 1 where the graph schema data structure represents an edge-labeled ontology graph, said edge-labeled ontology graph comprising nodes representing classes, edges representing object properties between the nodes and datatype properties representing the attributes associated with the nodes.
 12. The method of claim 1 where the graph schema data structure represents a property graph schema, said property graph schema comprised of nodes, edges representing relationships between the nodes, and properties representing attributes of the nodes and edges.
 13. The method of claim 1 further comprising an at least one remote computers connected to the server using a data network, each of the at least one remote computers comprised of a channel module that maintains a real-time communication channel with the server and the other at least one remote computers, said communication channel uniquely associated with an element of the graph schema.
 14. The method of claim 1 further comprising generating and storing a graph schema definition file and a mapping file.
 15. A method executed by a computer system for operating a graph schema data structure stored in memory, said graph schema data structure comprising data elements and data relationships among the data elements, said method comprising: generating mapping data by using a database schema retrieved from a database location to generate an ontology associated with a connected database associated with the graph schema data structure; receiving as input a first data that comprises modifications of the graph schema data structure, the modifications indicating one or more selections of one or more graphical data structure instances presented as one or more graphical component data structures on a user interface in a browser, each of the one or more selections being representative of a graphical change in the graph schema data structure that corresponds to another change in the connected database; using the first input data, modifying the graph schema data structure; receiving data representing at least part of the graph schema data structure; receiving from a server a data representing modifications made to the graph schema data structure; receiving data representing a plurality of edits to the graph schema data structure; storing at the server incremental changes to reconstruct or deconstruct creation of the graph schema data structure associated with the ontology responsive to the input and other inputs associated with the plurality of edits, the incremental changes being associated with the data representing modifications and responsive to collaborative editing of the graph schema via a plurality of graph schema editors, each of the plurality of graph schema editors being associated with one of a plurality of remote computing devices that provide data representing the input and other inputs associated with the plurality of edits, the plurality of graph schema editors generating collaborative editing data sent to a server; establishing a chat channel configured to work with at least one of the plurality of edits, the chat channel being associated with the data element of the graph schema data structure and the chat channel being opened when the data element is selected; receiving data representing a query that is applied to the connected database to refer to a query result based on the query as a concept mapped to an element comprising at least a portion of the graph data structure; and generating image data from the received at least one graph schema data structure data and modification data, that when rendered on a computer screen associated with the at least one remote computer is configured to visually depicts the data elements and data relationships among the elements comprising the graph schema, wherein the incremental changes of the graph schema data structure based on the collaborative editing are displayed in the computer screen as the data elements and data relationships among the elements including the at least one edit associated with the chat channel.
 16. The method of claim 15 where the graph schema data structure is comprised of data representing nodes, edges and attributes associated with the nodes and edges.
 17. The method of claim 15 where the graph schema data structure represents an edge-labeled ontology graph, said edge-labeled ontology graph comprised of nodes representing classes, edges representing object properties between the nodes and datatype properties representing the attributes associated with the nodes.
 18. The method of claim 15 where the graph schema data structure represents a property graph schema, said property graph schema comprised of nodes, edges representing relationships between the nodes, and properties representing attributes of the nodes and edges.
 19. The method of claim 15 further comprising, on an at least one remote computers connected to the server using a data network, each of the at least one remote computers operating a real-time communication channel with the server and the other at least one remote computers, said communication channel uniquely associated with an element of the graph schema.
 20. The method of claim 15 further comprising generating and storing a graph schema definition file. 